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//home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/Red_Alleles.aln
CLUSTAL X (1.83) multiple sequence alignment 98-210_Red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-212_Red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-208_Red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-182_Red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-171_Red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-170_Red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-169_Red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-147_Red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-149_Red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-152_Red_locus1 ---------------------------------------------------ATGGCTAAC 98-150_red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-151_Red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-180_Red_locus1 ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACGGAGATGGCTAAC 98-150_Red_locus2 ------------------------------------------------------------ 98-147_Red_locus2 ------------------------------------------------------------ 98-182_Red_locus2 ------------------------------------------------------------ 98-171_Red_locus2 ------------------------------------------------------------ 98-180_Red_locus2 ------------------------------------------------------------ 98-212_Red_locus2 ------------------------------------------------------------ 98-152_Red_locus2 ------------------------------------------------------------ 98-151_Red_locus2 ------------------------------------------------------------ 98-169_Red_locus2 ------------------------------------------------------------ 98-208_Red_locus2 ------------------------------------------------------------ 98-210_Red_locus2 ------------------------------------------------------------ 98-170_Red_locus2 ------------------------------------------------------------ 98-149_Red_locus2 ------------------------------------------------------------ 98-210_Red_locus1 GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-212_Red_locus1 GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-208_Red_locus1 GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-182_Red_locus1 GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-171_Red_locus1 GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-170_Red_locus1 GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-169_Red_locus1 GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-147_Red_locus1 GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-149_Red_locus1 GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-152_Red_locus1 GCAA-GACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-150_red_locus1 GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-151_Red_locus1 GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-180_Red_locus1 GCGAAGACAAATGCCGAGACTCATTTTAAACAAGCGAGGGCCATTACAAATATAATCAGA 98-150_Red_locus2 ------------------------------------------------------------ 98-147_Red_locus2 ------------------------------------------------------------ 98-182_Red_locus2 ------------------------------------------------------------ 98-171_Red_locus2 ------------------------------------------------------------ 98-180_Red_locus2 ------------------------------------------------------------ 98-212_Red_locus2 ------------------------------------------------------------ 98-152_Red_locus2 ------------------------------------------------------------ 98-151_Red_locus2 ------------------------------------------------------------ 98-169_Red_locus2 ------------------------------------------------------------ 98-208_Red_locus2 ------------------------------------------------------------ 98-210_Red_locus2 ------------------------------------------------------------ 98-170_Red_locus2 ------------------------------------------------------------ 98-149_Red_locus2 ------------------------------------------------------------ 98-210_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-212_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-208_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-182_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-171_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-170_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-169_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-147_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-149_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-152_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-150_red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-151_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-180_Red_locus1 TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-150_Red_locus2 ------------------------------------------------------------ 98-147_Red_locus2 ------------------------------------------------------------ 98-182_Red_locus2 ------------------------------------------------------------ 98-171_Red_locus2 ------------------------------------------------------------ 98-180_Red_locus2 ------------------------------------------------------------ 98-212_Red_locus2 ------------------------------------------------------------ 98-152_Red_locus2 ------------------------------------------------------------ 98-151_Red_locus2 ------------------------------------------------------------ 98-169_Red_locus2 ------------------------------------------------------------ 98-208_Red_locus2 ------------------------------------------------------------ 98-210_Red_locus2 ------------------------------------------------------------ 98-170_Red_locus2 ------------------------------------------------------------ 98-149_Red_locus2 ------------------------------------------------------------ 98-210_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-212_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-208_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-182_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-171_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-170_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-169_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-147_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-149_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-152_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-150_red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-151_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-180_Red_locus1 CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-150_Red_locus2 ------------------------------------------GTGTGTGCGGAAGCGAAA 98-147_Red_locus2 -------------------------------------------CGTGGG--CGAGC-AA- 98-182_Red_locus2 ----------------------------------CCCTGTGCGTGCGGC--GAAGC-AA- 98-171_Red_locus2 --------------------------------------TGTGGTGCGGC--GAAGC-AAA 98-180_Red_locus2 ---------------------------------------CCTGTGCGGCA-GAAGC-AAA 98-212_Red_locus2 ----------------------------------------CTGTGCGGC--GAAGC-AAA 98-152_Red_locus2 ------------------------------------------------------------ 98-151_Red_locus2 ---------------------------------------------------GAAGC-AAA 98-169_Red_locus2 -------------------------------------GGTGCGGGCAG----AAGC-AAA 98-208_Red_locus2 ------------------------------------------GGGCAGG---AAGC-AAA 98-210_Red_locus2 --------------------------------------------GCAG----AAGC-AAA 98-170_Red_locus2 -------------------------------GTTTGACCCTGTTGCGGGCGAAAGC-AAA 98-149_Red_locus2 ---------------------------------------TGCGTGCAGA---AAGC-AAA 98-210_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-212_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-208_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-182_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-171_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-170_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-169_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-147_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-149_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAAT 98-152_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAAT 98-150_red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAAT 98-151_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAAT 98-180_Red_locus1 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-150_Red_locus2 GA-TTAGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCGAATCAAT 98-147_Red_locus2 GA-TTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-182_Red_locus2 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-171_Red_locus2 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-180_Red_locus2 GA-TTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-212_Red_locus2 GA-TTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-152_Red_locus2 GA-TTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAATTCAAT 98-151_Red_locus2 GA-TTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAAT 98-169_Red_locus2 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-208_Red_locus2 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-210_Red_locus2 GAATTGGACGATAAAGTCCAGGATAAATCCAAACCAGCTGAAAAAGAAAATCAAATCAAT 98-170_Red_locus2 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAAT 98-149_Red_locus2 GAATTGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAAT ** ** **************************** *************** * * ***** 98-210_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGTGTT 98-212_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGTGTT 98-208_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGTGTT 98-182_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGTGTT 98-171_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGTGTT 98-170_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGTGTT 98-169_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGTGTT 98-147_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGTGTT 98-149_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-152_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-150_red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-151_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-180_Red_locus1 TGGTGGAAATATTCAGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAGTGTT 98-150_Red_locus2 TGGAGGAAGTATTCAGGACTCACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGCT 98-147_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-182_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-171_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-180_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-212_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-152_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-151_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-169_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-208_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-210_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-170_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT 98-149_Red_locus2 TGGTGGAAATATTCAGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAGTGTT *** **** ********* * ********* *************************** * 98-210_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-212_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-208_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-182_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-171_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-170_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-169_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-147_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-149_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-152_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-150_red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-151_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-180_Red_locus1 GGTGATATTGATAAACAAATAGAGTTG 98-150_Red_locus2 GGTGATATTGATAAACAGATAGAGTTA 98-147_Red_locus2 GGTGATATTGATAAACAAATAGAACTA 98-182_Red_locus2 GGTGATATTGATAAACAAATAGAACTA 98-171_Red_locus2 GGTGATATTGATAAACAAATAGAACTA 98-180_Red_locus2 GGTGATATTGATAAACAAATAGAACTA 98-212_Red_locus2 GGTGATATTGATAAACAAATAGAACTA 98-152_Red_locus2 GGTGATATTGATAAACAAATAGAACTA 98-151_Red_locus2 GGTGATATTGATAAACAAATAGAACTA 98-169_Red_locus2 GGTGATATTGATAAACAAATAGAACTA 98-208_Red_locus2 GGTGATATTGATAAACAAATAGAACTA 98-210_Red_locus2 GGTGATATTGATAAACAAATAGAACTA 98-170_Red_locus2 GGTGATATTGATAAACAAATAGAACTA 98-149_Red_locus2 GGTGATATTGATAAACAAATAGAACTA ***************** ***** *