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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/seqs.aln
CLUSTAL W (1.83) multiple sequence alignment J178_Red_locus2_EQ ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTAAC J230_Red_locus1_NK ATGGAATCAGTAAAAACAGAAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTGAC J282_Red_locus2_EQ ATGGAATCAGTAAAAACAGGAAAAGCAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC J258_Red_locus1_SN ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC J178_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTAAC J282_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTAAC J170_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACGCAGAGACAGCTGAC J254_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC 98-208_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-210_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-212_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-182_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-171_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-170_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-169_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-147_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-149_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-152_Red_locus1_NK ---------------------------------------------------ATGGCTAAC 98-150_red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-151_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-180_Red_locus1_NK ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACGGAGATGGCTAAC J166_Red_locus1_KD ATGGAATCAGTAAAAACAGGAAAAACAAATAAGGTTGGCAAGAACACAGAGATGGCTAAC 98-149_Red_locus2_KD ------------------------------------------------------------ 98-170_Red_locus2_KD ------------------------------------------------------------ J166_Red_locus2_KD ------------------------------------------------------------ 98-210_Red_locus2_KD ------------------------------------------------------------ 98-169_Red_locus2_KD ------------------------------------------------------------ 98-208_Red_locus2_KD ------------------------------------------------------------ 98-151_Red_locus2_KD ------------------------------------------------------------ 98-152_Red_locus2_KD ------------------------------------------------------------ 98-147_Red_locus2_KD ------------------------------------------------------------ 98-182_Red_locus2_KD ------------------------------------------------------------ 98-171_Red_locus2_KD ------------------------------------------------------------ 98-212_Red_locus2_KD ------------------------------------------------------------ 98-180_Red_locus2_KD ------------------------------------------------------------ J254_Red_locus2_EQ ------------------------------------------------------------ 98-150_Red_locus2_EQ ------------------------------------------------------------ J178_Red_locus2_EQ ACAAAGGCAAATAAAGAGGCTCATTTTAAACAAGCGAGCGCCATTACAAATACGCTCAGA J230_Red_locus1_NK ACAAAGGCAAATAAAGAGGCTCATTTAAAACAAGCGAGTGCCATTACAAATACGCTCAGA J282_Red_locus2_EQ ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA J258_Red_locus1_SN ACAAAGGCAAATAAAGAGGCTCATTTTAAACAAGCGAGCGCCATTACAAATACGCTCAGA J178_Red_locus1_NK ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGCGCCATTACAAATATAATCAGA J282_Red_locus1_NK ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGCACCATTACAAATATAATCAGA J170_Red_locus1_NK ACAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAGCGCCATTACAAATATAATCAGA J254_Red_locus1_NK GCAAAGGCAAATAAAGAGACTCATTTTAAACAAGCGAATGCCATTACAAATATAATCAGA 98-208_Red_locus1_NK GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-210_Red_locus1_NK GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-212_Red_locus1_NK GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-182_Red_locus1_NK GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-171_Red_locus1_NK GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-170_Red_locus1_NK GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-169_Red_locus1_NK GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-147_Red_locus1_NK GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-149_Red_locus1_NK GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-152_Red_locus1_NK GCAA-GACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-150_red_locus1_NK GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-151_Red_locus1_NK GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-180_Red_locus1_NK GCGAAGACAAATGCCGAGACTCATTTTAAACAAGCGAGGGCCATTACAAATATAATCAGA J166_Red_locus1_KD GCAAAGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-149_Red_locus2_KD ------------------------------------------------------------ 98-170_Red_locus2_KD ------------------------------------------------------------ J166_Red_locus2_KD ------------------------------------------------------------ 98-210_Red_locus2_KD ------------------------------------------------------------ 98-169_Red_locus2_KD ------------------------------------------------------------ 98-208_Red_locus2_KD ------------------------------------------------------------ 98-151_Red_locus2_KD ------------------------------------------------------------ 98-152_Red_locus2_KD ------------------------------------------------------------ 98-147_Red_locus2_KD ------------------------------------------------------------ 98-182_Red_locus2_KD ------------------------------------------------------------ 98-171_Red_locus2_KD ------------------------------------------------------------ 98-212_Red_locus2_KD ------------------------------------------------------------ 98-180_Red_locus2_KD ------------------------------------------------------------ J254_Red_locus2_EQ ------------------------------------------------------------ 98-150_Red_locus2_EQ ------------------------------------------------------------ J178_Red_locus2_EQ TCAATTGGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAAACAC J230_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAAATTGTAAAGAGAGTTAGAGAACTTGTAAAAAAACAC J282_Red_locus2_EQ TCAATTGGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAGACAT J258_Red_locus1_SN TCAATTGGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAGACAC J178_Red_locus1_NK TCAATTAGTGGGTTTTTTACAAAGATCGCAAAGAGAGTTAGAGAACTTGTAAAAAAACAC J282_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAAATTGCAAAGAAAGTTAGAGAACTTGTAAAAAAACAC J170_Red_locus1_NK TCAATTAGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC J254_Red_locus1_NK TCAATTAGTGGGTTTTTTACAAAAATTGCAAAGAAAGTTAGAGAACTTGTAAAAAAACAT 98-208_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-210_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-212_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-182_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-171_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-170_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-169_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-147_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-149_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-152_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-150_red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-151_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-180_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC J166_Red_locus1_KD TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-149_Red_locus2_KD ------------------------------------------------------------ 98-170_Red_locus2_KD ------------------------------------------------------------ J166_Red_locus2_KD ------------------------------------------------------------ 98-210_Red_locus2_KD ------------------------------------------------------------ 98-169_Red_locus2_KD ------------------------------------------------------------ 98-208_Red_locus2_KD ------------------------------------------------------------ 98-151_Red_locus2_KD ------------------------------------------------------------ 98-152_Red_locus2_KD ------------------------------------------------------------ 98-147_Red_locus2_KD ------------------------------------------------------------ 98-182_Red_locus2_KD ------------------------------------------------------------ 98-171_Red_locus2_KD ------------------------------------------------------------ 98-212_Red_locus2_KD ------------------------------------------------------------ 98-180_Red_locus2_KD ------------------------------------------------------------ J254_Red_locus2_EQ ------------------------------------------------------------ 98-150_Red_locus2_EQ ------------------------------------------------------------ J178_Red_locus2_EQ CCCAAGAAAAGCAGGGCGGCATTAGTAGTATTGACCCATGTTGCATGCAGGAAAGCGAAA J230_Red_locus1_NK CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCATGCAAGAAAGCGAAA J282_Red_locus2_EQ CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGTGTGCAGGAAAGCGAAA J258_Red_locus1_SN CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGTGTGCAGGAAAGCGAAA J178_Red_locus1_NK CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCGAAA J282_Red_locus1_NK CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCATGCAAGAGGGCAAAA J170_Red_locus1_NK CCCAAGAAAAGCAATGCGGCATTAGTAGTATTGACCCATGTTGCATGCAGGAAAGCGAAA J254_Red_locus1_NK CCCAAGAAAAGCAATGCGGCATTAGTAGTATTAACCCATGTTGCGTGCAAGAAAGCGAAA 98-208_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-210_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-212_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-182_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-171_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-170_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-169_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-147_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-149_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-152_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-150_red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-151_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-180_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA J166_Red_locus1_KD CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-149_Red_locus2_KD -----------------------------------------TGCGTGCA-GAAAGC-AAA 98-170_Red_locus2_KD ---------------------------GT-TTGACCC-TGTTGCGGGC--GAAAGC-AAA J166_Red_locus2_KD ------------------------------------------GCGGGCA-GAAAGC-AAA 98-210_Red_locus2_KD ----------------------------------------------GCA-GAA-GC-AAA 98-169_Red_locus2_KD ---------------------------------------GGTGCGGGCA-GAA-GC-AAA 98-208_Red_locus2_KD --------------------------------------------GGGCA-GGAAGC-AAA 98-151_Red_locus2_KD ---------------------------------------------------GAAGC--AA 98-152_Red_locus2_KD ------------------------------------------------------------ 98-147_Red_locus2_KD ---------------------------------------------CGTGGGCGAGC-AA- 98-182_Red_locus2_KD ------------------------------------CCCTGTGCGTGCGGCGAAGC-AA- 98-171_Red_locus2_KD ----------------------------------------TGTGGTGCGGCGAAGC-AAA 98-212_Red_locus2_KD ------------------------------------------CTGTGCGGCGAAGC--AA 98-180_Red_locus2_KD -----------------------------------------CCTGTGCGGCAGAAGCAAA J254_Red_locus2_EQ -------------------------------------CCGGTGCGGGCA-GAAAGCGAAA 98-150_Red_locus2_EQ ----------------------------------------GTGTGTGCG-GAA-GCGAAA J178_Red_locus2_EQ GAATTGG-ACGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA J230_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA J282_Red_locus2_EQ GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCGAATCAA J258_Red_locus1_SN GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCGAATCAA J178_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA J282_Red_locus1_NK GAATTAG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA J170_Red_locus1_NK GAATTAG-ACGATAAAGTCCAAGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA J254_Red_locus1_NK GAATTAG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-208_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-210_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-212_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-182_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-171_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-170_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-169_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-147_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-149_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAA 98-152_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAA 98-150_red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAA 98-151_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAA 98-180_Red_locus1_NK GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA J166_Red_locus1_KD GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-149_Red_locus2_KD GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAA 98-170_Red_locus2_KD GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA J166_Red_locus2_KD GAATTGGGACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-210_Red_locus2_KD GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACCAGCTGAAAAAGAAAATCAAATCAA 98-169_Red_locus2_KD GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-208_Red_locus2_KD GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-151_Red_locus2_KD AGATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAAATCAA 98-152_Red_locus2_KD -GATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAACCAATTCAA 98-147_Red_locus2_KD GA-TTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-182_Red_locus2_KD GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-171_Red_locus2_KD GAATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-212_Red_locus2_KD AGATTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA 98-180_Red_locus2_KD GA-TTGG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCAAATCAA J254_Red_locus2_EQ GAATTAG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCATATCAA 98-150_Red_locus2_EQ GA-TTAG-ACGATAAAGTCCAGGATAAATCCAAACAAGCTGAAAAAGAAAATCGAATCAA ** * ************* ************* *************** * **** J178_Red_locus2_EQ TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG J230_Red_locus1_NK TTGGTGGAAATATTCTTCAGGATTAACAATAGCGGCAAGTTTATTACTAGCCGCTTGTAG J282_Red_locus2_EQ TTGGTGGAAGTATTC---AGGACTCACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG J258_Red_locus1_SN TTGGTGGAAGTATTC---AGGACTCACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG J178_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGTGGCAAGTTTATTATTAGCCGCTTGTAG J282_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG J170_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG J254_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG 98-208_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG 98-210_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG 98-212_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG 98-182_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG 98-171_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG 98-170_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG 98-169_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG 98-147_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG 98-149_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-152_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-150_red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-151_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-180_Red_locus1_NK TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG J166_Red_locus1_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTAG 98-149_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-170_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG J166_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-210_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-169_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-208_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-151_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-152_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-147_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-182_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-171_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-212_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-180_Red_locus2_KD TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG J254_Red_locus2_EQ TTGGTGGAAATATTC---AGGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG 98-150_Red_locus2_EQ TTGGAGGAAGTATTC---AGGACTCACAATAGCGACAAGTTTATTATTAGCCGCTTGTAG **** **** ***** **** * ******* * *********** ************* J178_Red_locus2_EQ CGTTGGTGATATTGATAAACAAATAGAGTTA----------------------------- J230_Red_locus1_NK CGCTGGTGATATTGATAAACAAATAGAGTTA----------------------------- J282_Red_locus2_EQ TGCTGGTGATATTGATAAACAGATAGAGTTA----------------------------- J258_Red_locus1_SN TGCTGGTGATATTGATAAACAGATAGAGTTA----------------------------- J178_Red_locus1_NK CGTTGGTGATACTGATAAATAGATAGAGTTA----------------------------- J282_Red_locus1_NK CGTTGGTGATACTGATAAACAGATAGAGTTA----------------------------- J170_Red_locus1_NK CGTTGGTGATACTGATAAACAGATAGAGTTA----------------------------- J254_Red_locus1_NK CGCTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-208_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-210_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-212_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-182_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-171_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-170_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-169_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-147_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-149_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-152_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-150_red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-151_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- 98-180_Red_locus1_NK TGTTGGTGATATTGATAAACAAATAGAGTTG----------------------------- J166_Red_locus1_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-149_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-170_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- J166_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-210_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-169_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-208_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-151_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-152_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-147_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-182_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-171_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-212_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- 98-180_Red_locus2_KD TGTTGGTGATATTGATAAACAAATAGAACTA----------------------------- J254_Red_locus2_EQ TGTTGGTGATACTGATAAACAGATAGAGTTAGAACAAGAAAAAAAGGAAGCTGAAAACGC 98-150_Red_locus2_EQ TGCTGGTGATATTGATAAACAGATAGAGTTA----------------------------- * ******** ******* * ***** * J178_Red_locus2_EQ ---------------------------------- J230_Red_locus1_NK ---------------------------------- J282_Red_locus2_EQ ---------------------------------- J258_Red_locus1_SN ---------------------------------- J178_Red_locus1_NK ---------------------------------- J282_Red_locus1_NK ---------------------------------- J170_Red_locus1_NK ---------------------------------- J254_Red_locus1_NK ---------------------------------- 98-208_Red_locus1_NK ---------------------------------- 98-210_Red_locus1_NK ---------------------------------- 98-212_Red_locus1_NK ---------------------------------- 98-182_Red_locus1_NK ---------------------------------- 98-171_Red_locus1_NK ---------------------------------- 98-170_Red_locus1_NK ---------------------------------- 98-169_Red_locus1_NK ---------------------------------- 98-147_Red_locus1_NK ---------------------------------- 98-149_Red_locus1_NK ---------------------------------- 98-152_Red_locus1_NK ---------------------------------- 98-150_red_locus1_NK ---------------------------------- 98-151_Red_locus1_NK ---------------------------------- 98-180_Red_locus1_NK ---------------------------------- J166_Red_locus1_KD ---------------------------------- 98-149_Red_locus2_KD ---------------------------------- 98-170_Red_locus2_KD ---------------------------------- J166_Red_locus2_KD ---------------------------------- 98-210_Red_locus2_KD ---------------------------------- 98-169_Red_locus2_KD ---------------------------------- 98-208_Red_locus2_KD ---------------------------------- 98-151_Red_locus2_KD ---------------------------------- 98-152_Red_locus2_KD ---------------------------------- 98-147_Red_locus2_KD ---------------------------------- 98-182_Red_locus2_KD ---------------------------------- 98-171_Red_locus2_KD ---------------------------------- 98-212_Red_locus2_KD ---------------------------------- 98-180_Red_locus2_KD ---------------------------------- J254_Red_locus2_EQ TAGGGATAGAGCAAACAAGAGTGGGATAGAACTA 98-150_Red_locus2_EQ ----------------------------------