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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/pre-igrs.aln
CLUSTAL W (1.83) multiple sequence alignment HP1_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- M-00-12_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- M-00-12_Pre-RD_non-RD_RD-Green -------------------------------------------------- M-00-14_Pre-RD_RD-Red-Long_non -------------------------------------------------- 26695_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- J99_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- 98-149_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-169_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-212_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-152_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-210_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-150_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-151_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-170_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-180_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-171_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-182_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-147_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- J166_Pre-RD_non-RD_RD-Green_1 -------------------------------------------------- 98-152_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-18_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-147_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-210_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-171_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-180_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-151_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-212_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-170_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-208_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- M-00-14_Pre-RD_RD-Red-Short_no -------------------------------------------------- 98-149_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-169_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- J99_Pre-RD_non-RD_RD-Green_2 -------------------------------------------------- 26695_Pre-RD_non-RD_RD-Red_2 TTAGAAGAGCCTTTGGAAGTCTCTGCTAAACAATTGGCTGAAATCAAAAA J254_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-150_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- HP1_Pre-RD_RD-Green_non-RD_2 -------------------------------------------------- M-00-12_Pre-RD_RD-Green_non-RD -------------------------------------------------- M-00-14_Pre-RD_RD-Green_non-RD -------------------------------------------------- M-00-14_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- J166_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-208_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- HP1_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- M-00-12_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- M-00-12_Pre-RD_non-RD_RD-Green -------------------------------------------------- M-00-14_Pre-RD_RD-Red-Long_non -------------------------------------------------- 26695_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- J99_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- 98-149_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-169_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-212_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-152_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-210_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-150_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-151_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-170_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-180_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-171_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-182_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-147_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- J166_Pre-RD_non-RD_RD-Green_1 -------------------------------------------------- 98-152_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-18_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-147_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-210_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-171_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-180_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-151_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-212_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-170_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-208_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- M-00-14_Pre-RD_RD-Red-Short_no -------------------------------------------------- 98-149_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-169_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- J99_Pre-RD_non-RD_RD-Green_2 -------------------------------------------------- 26695_Pre-RD_non-RD_RD-Red_2 ACGCATGAAAAATTCGCCTAACCAACGCCCCGTCCAGCCTGACTACAACA J254_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-150_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- HP1_Pre-RD_RD-Green_non-RD_2 -------------------------------------------------- M-00-12_Pre-RD_RD-Green_non-RD -------------------------------------------------- M-00-14_Pre-RD_RD-Green_non-RD -------------------------------------------------- M-00-14_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- J166_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-208_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- HP1_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- M-00-12_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- M-00-12_Pre-RD_non-RD_RD-Green -------------------------------------------------- M-00-14_Pre-RD_RD-Red-Long_non -------------------------------------------------- 26695_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- J99_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- 98-149_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-169_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-212_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-152_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-210_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-150_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-151_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-170_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-180_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-171_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-182_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-147_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- J166_Pre-RD_non-RD_RD-Green_1 -------------------------------------------------- 98-152_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-18_Pre-RD_non-RD_RD-Red_2 ---------------------------------AGCGGGATCCGTAAAGG 98-147_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-210_Pre-RD_non-RD_RD-Red_2 ---------------------------AGTCAGTGNGATCCGGTAAAAAG 98-171_Pre-RD_non-RD_RD-Red_2 -------------------------CAAGTCAGTG-GATCCCGTAAAAGG 98-180_Pre-RD_non-RD_RD-Red_2 -------------------------CAAGTCAGTGAGATCCGGTAAAATG 98-151_Pre-RD_non-RD_RD-Red_2 -------------------------------------------------- 98-212_Pre-RD_non-RD_RD-Red_2 -----------------------CCTAAGTCAGTGGGATACGACTAAAAT 98-170_Pre-RD_non-RD_RD-Red_2 -------------------------CAAGTCAGTGGGATCC-GCAAAAAG 98-208_Pre-RD_non-RD_RD-Red_2 --------------------------AAGTCAGTGGGATCCGCT--AATG M-00-14_Pre-RD_RD-Red-Short_no -------------------------------------------------G 98-149_Pre-RD_non-RD_RD-Red_2 ----------------------------------------GACGCTAATG 98-169_Pre-RD_non-RD_RD-Red_2 ----------------------------------------GACGCTAATG J99_Pre-RD_non-RD_RD-Green_2 -----------------------------------AGATCCGCTAAAATT 26695_Pre-RD_non-RD_RD-Red_2 CCGTGATCATTAAAAGCTCAGCTGAGACCCGCTAAAGATCCGCTAAATTT J254_Pre-RD_non-RD_RD-Red_2 ----------------------------------------CGCTAAA-TG 98-150_Pre-RD_non-RD_RD-Red_2 -----------------------------------AGACCCACTAAAATG HP1_Pre-RD_RD-Green_non-RD_2 -------------------------------------------------- M-00-12_Pre-RD_RD-Green_non-RD -----------------------------------------------AAG M-00-14_Pre-RD_RD-Green_non-RD ---------------------------------------GGACGCTAAGG M-00-14_Pre-RD_non-RD_RD-Red_1 ----------------------------------------AGACGCTAAG J166_Pre-RD_non-RD_RD-Red_2 -----------------------------------------------TAC 98-208_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- HP1_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- M-00-12_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- M-00-12_Pre-RD_non-RD_RD-Green -------------------------------------------------- M-00-14_Pre-RD_RD-Red-Long_non -------------------------------------------------- 26695_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- J99_Pre-RD_non-RD_RD-Red_1 -------------------------------------------------- 98-149_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-169_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-212_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-152_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-210_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-150_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-151_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-170_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-180_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-171_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-182_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- 98-147_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- J166_Pre-RD_non-RD_RD-Green_1 -------------------------------------------------- 98-152_Pre-RD_non-RD_RD-Red_2 ---------CTTTTATAA--GAGAGAGGTATAAAAATCATTCTTCATAA- 98-18_Pre-RD_non-RD_RD-Red_2 AAACTCTCTCTTTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- 98-147_Pre-RD_non-RD_RD-Red_2 ---CTCTCT--TTTATAA--GAGAGAGGTATAAAAATCATTCTTCATAA- 98-210_Pre-RD_non-RD_RD-Red_2 GAACTCTCTC-TTTATAA--GAGAGAGGTATAAAAATCATTCTTCATAA- 98-171_Pre-RD_non-RD_RD-Red_2 AAACTCTCTCTTTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- 98-180_Pre-RD_non-RD_RD-Red_2 AAACTCTCTCTTTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- 98-151_Pre-RD_non-RD_RD-Red_2 GAACTCTCTCTTTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- 98-212_Pre-RD_non-RD_RD-Red_2 GAACTCTCTCTTTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- 98-170_Pre-RD_non-RD_RD-Red_2 AAACTCTCTC-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- 98-208_Pre-RD_non-RD_RD-Red_2 AAACTCTCTCTTTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- M-00-14_Pre-RD_RD-Red-Short_no AAACTCTCTC-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- 98-149_Pre-RD_non-RD_RD-Red_2 AAACTCTCTC-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- 98-169_Pre-RD_non-RD_RD-Red_2 AAACTCTCTC-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAA- J99_Pre-RD_non-RD_RD-Green_2 AAAACTCTCTCTTT-TAA--AAGAGGGAGGTAAAAATCATTCTTTATAA- 26695_Pre-RD_non-RD_RD-Red_2 AAAACCCCCTCTTT-TAA--AAGAGGGAGGTAAAAATCATTCTTCATAA- J254_Pre-RD_non-RD_RD-Red_2 AAAACTCTCTCTTTATAATAAAGAGGGAGATAAAAATCATTCTTCATGA- 98-150_Pre-RD_non-RD_RD-Red_2 AAAACCCTCTCTTTATAA-AGAGAGGGATATAAAAATCATTCTTCATGA- HP1_Pre-RD_RD-Green_non-RD_2 -ACTCTCTCTATTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAAT M-00-12_Pre-RD_RD-Green_non-RD GAACTCTCTC-TTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAAT M-00-14_Pre-RD_RD-Green_non-RD AAACTCTCTCTTTTATAA-AGAGAGAGGTATAAAAATCATTCTTCATAAT M-00-14_Pre-RD_non-RD_RD-Red_1 GAACTCTCTC-TTTATAA--GAGAGAGGTATAAAAATCATTCTTCATAAT J166_Pre-RD_non-RD_RD-Red_2 CAACCTTTTTTCAAAAAACAATCTTACCTTTCAAAATTATATCATGGAA- 98-208_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- HP1_Pre-RD_non-RD_RD-Red_1 ---------CTTGCGGGTTACCCCCATT-GTA-------GTTTTACCTTA M-00-12_Pre-RD_non-RD_RD-Red_1 -------------------ACCTCCATTAGTA-------GTTTTACCTTA M-00-12_Pre-RD_non-RD_RD-Green --------------------ACTCCATT-GTA-------ATTTTACCTTA M-00-14_Pre-RD_RD-Red-Long_non -----------CTTGGGTTACCTCC--TAGTA-------GTTT-ACCTTA 26695_Pre-RD_non-RD_RD-Red_1 --------------------CCTCCATTTGTAA------GTTTTACCTTA J99_Pre-RD_non-RD_RD-Red_1 --------------------CCTCCATAGGTAACCCATAGTTTTACCTTA 98-149_Pre-RD_non-RD_RD-Green_ ---CCCTTATGCGCGGTTTACCTCCATTTGTAGT------TTTACCTTTA 98-169_Pre-RD_non-RD_RD-Green_ -------TATGCGCGGTTTACCTCCATTTGTAAG------TTTTACCTTA 98-212_Pre-RD_non-RD_RD-Green_ ----------GCGCG-TTTACCTCCATTTGTAG-------TTTTACCTTA 98-152_Pre-RD_non-RD_RD-Green_ ---------TGCGCG-TTTACCTCCATTTGTAAGG-----TTTTACCTTA 98-210_Pre-RD_non-RD_RD-Green_ ------------GCCGTTTACCTCCATTTGTAG-------TTTTACCTTA 98-150_Pre-RD_non-RD_RD-Green_ ------------GCGTTTTACCTCCATTTGTAAG------TTTTACCTTA 98-151_Pre-RD_non-RD_RD-Green_ ------------GCGTTTTACCTCCATTTGTAAG------TTTTACCTTA 98-170_Pre-RD_non-RD_RD-Green_ ----------TTTGGCGTTACCTCNATT-GTAG--------TTTACCTTA 98-180_Pre-RD_non-RD_RD-Green_ -------------GGCGTTAC--CCATT-GTAG--------TTTACCTTA 98-171_Pre-RD_non-RD_RD-Green_ ---------------GGTTACC-CCATT-GTAG--------TTTACCTTA 98-182_Pre-RD_non-RD_RD-Green_ -------------GGGGTTACC-CCATT-GTAG--------TTTACCTTA 98-147_Pre-RD_non-RD_RD-Green_ -----------------TTAC--CCATT-GTAG--------TTTACCTTA J166_Pre-RD_non-RD_RD-Green_1 -------------------------------------------------- 98-152_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-18_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-147_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-210_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-171_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-180_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-151_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-212_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-170_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-208_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA M-00-14_Pre-RD_RD-Red-Short_no --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-149_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-169_Pre-RD_non-RD_RD-Red_2 --AACAACGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA J99_Pre-RD_non-RD_RD-Green_2 --AACACCGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 26695_Pre-RD_non-RD_RD-Red_2 --AACGCCAC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA J254_Pre-RD_non-RD_RD-Red_2 --AACACCGC-TAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA 98-150_Pre-RD_non-RD_RD-Red_2 --AACACCGCATAAAAATTGCAACCGCTTGTATTTTGTAAAACGCTCAAA HP1_Pre-RD_RD-Green_non-RD_2 AAAACAACGC-CAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA M-00-12_Pre-RD_RD-Green_non-RD AAAACAACNC-CAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA M-00-14_Pre-RD_RD-Green_non-RD AAAACAACGC-CAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA M-00-14_Pre-RD_non-RD_RD-Red_1 AAAACAACCC-CATAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAA J166_Pre-RD_non-RD_RD-Red_2 --ACTAATACGAAAAACCCACTCAAGTTAGATTGATTTATTTATTATCAA 98-208_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- HP1_Pre-RD_non-RD_RD-Red_1 CTTTAGGGATAG-TTAAGCTTTTAAATAAGA-ATCCC-TTTTATTACCAA M-00-12_Pre-RD_non-RD_RD-Red_1 CTTTAGGGATAG-TTAAGCTTTTAAATAAGA-ATCCCCTTTTATTACCAA M-00-12_Pre-RD_non-RD_RD-Green CTTTAGGGATAG-TTAAGCTTTTAAATAAGA-ATCCC-TTTTATTACCAA M-00-14_Pre-RD_RD-Red-Long_non CTTTAGGGATAG-TTAAGCTTTTAAATAAGA-ATCCC-TTTTATTACCAA 26695_Pre-RD_non-RD_RD-Red_1 CTTTAGGGATAGCTTAAGCTTTTAAATAAGG-ATCTC-TTTTATTGCCAA J99_Pre-RD_non-RD_RD-Red_1 CTTTAGGGGTAGTTTAAGCTTTTAAATAAGG-ATCTC-TTTTATTGTCAA 98-149_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-ATCTC-TTTTATTGTCAA 98-169_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-ATCTC-TTTTATTGTCAA 98-212_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-ATCTC-TTTTATTGTCAA 98-152_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-CTCTC-TTTTATTGTCAA 98-210_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-ATCTC-TTTTATTGTCAA 98-150_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-CCCTC-TTTTATTGTCAA 98-151_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-CTCTC-TTTTATTGTCAA 98-170_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-ATCTC-TTTTATTGTCAA 98-180_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-ATCTC-TTTTATTGTCAA 98-171_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-ATCTC-TTTTATTGTCAA 98-182_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-ATCTC-TTTTATTGTCAA 98-147_Pre-RD_non-RD_RD-Green_ TTTTAGGGATAGTTTAAGCTTTTAAATAAGG-ATCTC-TTTTATTGTCAA J166_Pre-RD_non-RD_RD-Green_1 ---------------------------------------------GTCAA 98-152_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG 98-18_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG 98-147_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG 98-210_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG 98-171_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG 98-180_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG 98-151_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG 98-212_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG 98-170_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG 98-208_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG M-00-14_Pre-RD_RD-Red-Short_no CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG 98-149_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG 98-169_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGA-AGTTTAAAAAAGGTTCTG J99_Pre-RD_non-RD_RD-Green_2 CGCTAAAAATGA-TTAGGATTCCTACTAAGG-AGTTTAAAAAAGGCTCTA 26695_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGG-AGTTTAAAAAAGGCTCTG J254_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTGGGATTCCTACTAAGG-AGTTTAAAAAAGGCTCTG 98-150_Pre-RD_non-RD_RD-Red_2 CGCTAAAGACGA-TTAGGATTCCTACTAAGG-AGTTTAAAAAAGGCTCTG HP1_Pre-RD_RD-Green_non-RD_2 CGCTAAAGACGA-TTGGAATTCCTACTAAGG-AGTTTAAAAAAGGCTCTG M-00-12_Pre-RD_RD-Green_non-RD CGCTAAAGACGA-TTGGAATTCCTACTAAGG-AGTTTAAAAAAGGCTCTG M-00-14_Pre-RD_RD-Green_non-RD CGCTAAAGACGA-TTGGAATTCCTACTAAGG-AGTTTAAAAAAGGCTCTG M-00-14_Pre-RD_non-RD_RD-Red_1 CGCTAAAGACGA-TTGGAATTCCTACTAAGG-AGTTTAAAAAAGGCTCTG J166_Pre-RD_non-RD_RD-Red_2 TGTTTATTATCAACGCGCAGTTAAGCCATGGTCTTTCAATTCTTTTTCTA 98-208_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- HP1_Pre-RD_non-RD_RD-Red_1 ATAACGCTACCATAAAAAAT----CAAAA-GCCGACAGATAA-TTAAAAA M-00-12_Pre-RD_non-RD_RD-Red_1 ATAACGCTACCATAAAAAAT----CAAAA-GCCGACAGATAA-TTAAAAA M-00-12_Pre-RD_non-RD_RD-Green ATAACGCTACCATAAAAAAT----CAAAAAGCCGACAGATAA-TTAAAAA M-00-14_Pre-RD_RD-Red-Long_non ATAACGCTACCATAAAAAAT----CAAAA-GCCGACAGATAA-TTAAAAA 26695_Pre-RD_non-RD_RD-Red_1 ATAACGCTACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA J99_Pre-RD_non-RD_RD-Red_1 ATAACGCTACCATAAAAAATGATCTCAAAAGCCGACAGATAA-TTAAAAA 98-149_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-169_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-212_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-152_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-210_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-150_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-151_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-170_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-180_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-171_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-182_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-147_Pre-RD_non-RD_RD-Green_ ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA J166_Pre-RD_non-RD_RD-Green_1 ATAACGCCACCATAAAAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAA 98-152_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA 98-18_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA 98-147_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA 98-210_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA 98-171_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA 98-180_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA 98-151_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA 98-212_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA 98-170_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA 98-208_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA M-00-14_Pre-RD_RD-Red-Short_no TTCTAATTGGGTAACATGGAGCCTTTAAAATACCATAAATAAGCTAA-AA 98-149_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA 98-169_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAACATAGAGCCTTTAAAATACCATAAATAAGCTAA-AA J99_Pre-RD_non-RD_RD-Green_2 TTCTAATTGGGTAATATAGAGTCTTTAAAATACCATAAATAAGCTAAAAA 26695_Pre-RD_non-RD_RD-Red_2 TTCTAACTGGGTAACATAGAGTTTTTAAAATACTATAAATAAGCTAAGAA J254_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAATATAGAGTCTTTAAAATACCATAAATAAGCTAAAAA 98-150_Pre-RD_non-RD_RD-Red_2 TTCTAATTGGGTAATATAGAGTCTTTAAAATACCATAAATAAGCTAAAAA HP1_Pre-RD_RD-Green_non-RD_2 TTCTAATTGGGTAACATAGAGTTTTTAAAA-ACCATAAATAAGCTAAAAA M-00-12_Pre-RD_RD-Green_non-RD TTCTAATTGGGTAACATAGAGTTTTTAAAATACCATAAATAAGCTAAAAA M-00-14_Pre-RD_RD-Green_non-RD TTCTAATTGGGTAACATAGAGTTTTTAAAATACCATAAATAAGCTAAAAA M-00-14_Pre-RD_non-RD_RD-Red_1 TTCTAATTGGGTAACATAGAGTTTTTAAAATACCATAAATAAGCTAAAAA J166_Pre-RD_non-RD_RD-Red_2 ACTTGGCTACGGCGTTCCAAGTGGGGATCACGCTATCAGGGT-TTAAAAG 98-208_Pre-RD_non-RD_RD-Green_ -------------------------------------------------- HP1_Pre-RD_non-RD_RD-Red_1 CT-TGGTGTAATGTT--------TT-AATCG M-00-12_Pre-RD_non-RD_RD-Red_1 CT-TGGTGTAATGTT--------TT-AATCG M-00-12_Pre-RD_non-RD_RD-Green CT-TGGTGTAATGTT--------TT-AATCG M-00-14_Pre-RD_RD-Red-Long_non CT-TGGTGTAATGTT--------TT-AATCG 26695_Pre-RD_non-RD_RD-Red_1 CT-TGGTGCAATGTT--------TTTAACCG J99_Pre-RD_non-RD_RD-Red_1 CT-T-----AATGTT--------TTTAATCG 98-149_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG 98-169_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG 98-212_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG 98-152_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG 98-210_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG 98-150_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG 98-151_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG 98-170_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG 98-180_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG 98-171_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG 98-182_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG 98-147_Pre-RD_non-RD_RD-Green_ CT-T-----AATGTT--------TTTAATCG J166_Pre-RD_non-RD_RD-Green_1 CT-T-----AATGTT--------TTTAATGC 98-152_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- 98-18_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- 98-147_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- 98-210_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- 98-171_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- 98-180_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- 98-151_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- 98-212_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- 98-170_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- 98-208_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- M-00-14_Pre-RD_RD-Red-Short_no CGATTTTATGGTGTT------TTCTTATGC- 98-149_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- 98-169_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- J99_Pre-RD_non-RD_RD-Green_2 CGATTTTATGGTGTT------TTCTTATGCC 26695_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTT------TTCTTATGC- J254_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTGTTCTTATTTTCTTATGC- 98-150_Pre-RD_non-RD_RD-Red_2 CGATTTTATGGTATTCTTATTTTCTTATGC- HP1_Pre-RD_RD-Green_non-RD_2 CGATTTTATGGTGTT--------CTTATGC- M-00-12_Pre-RD_RD-Green_non-RD CGATTTTATGGTGTT--------CTTATGC- M-00-14_Pre-RD_RD-Green_non-RD CGATTTTATGGTGTT--------CTTATGC- M-00-14_Pre-RD_non-RD_RD-Red_1 CGATTTTATGGTGTT--------CTTATGC- J166_Pre-RD_non-RD_RD-Red_2 AAATGGAA----------------------- 98-208_Pre-RD_non-RD_RD-Green_ -------------------------------