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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/j99_and_152.aln
CLUSTAL W (1.83) multiple sequence alignment J99_Red_locus1_NK ATGGAATCAGTAAAAACAGTAAAAACAAATAAAGTTGGCAAAAACACAGAGACAGCTAAC 98-152_Red_locus1_NK ---------------------------------------------------ATGGCTAAC 98-152_Red_locus2_KD ------------------------------------------------------------ J99_Green_locus2_SN ------------------------------------------------------------ 98-152 ------------------------------------------------------------ J99_Red_locus1_NK ACAGAGGCAAGTAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATACGCTCCGA 98-152_Red_locus1_NK GCA-AGACAAATAAAGAGACTCATTTTAAACAAGCGAGTGCCATTACAAATATAATCAGA 98-152_Red_locus2_KD ------------------------------------------------------------ J99_Green_locus2_SN ----------------ATGCCTGTTATAAGAGTTTTAGTAATGCTTGCAACAATGATGAT 98-152 ------------------------------------------------------------ J99_Red_locus1_NK TCAATTGGTGGGATTTTTACAAAAATTGCAAAGAAAGTTAGAGAACTTGTGAAAAAACAT 98-152_Red_locus1_NK TCAATTGGTGGGTTTTTTACAAAGATTATGAAGAGAGTTAGAGAACTTGTAAAAAAACAC 98-152_Red_locus2_KD ------------------------------------------------------------ J99_Green_locus2_SN GAAATTAGTAAAAACGGCAAAAGAAA---AGAAAGTTTTTAAGAATGTGGGAATATCTAT 98-152 ------------------------------------------------------------ J99_Red_locus1_NK CCCAAGAAAAGCAGTGTGGCATTAGTAGTATTGACCCATATTGCGTGCAAGAGGGCAAAA 98-152_Red_locus1_NK CCCAAGAAAAGCAAGGCGGCATTAGTAGTATTGACCCATGTTGCGTGCAAGAAAGCAAAA 98-152_Red_locus2_KD ------------------------------------------------------------ J99_Green_locus2_SN AATGGGGATTGCTTTTTGGGAAGCGATAAAAGACTCGATAAAAAAACAAATTAAAAAAAG 98-152 ------------------------------------------------------------ J99_Red_locus1_NK GAATTGGACGATAAAGTCCAAGATAAATCCAAACAA--GCTGAAAAAGAAAATCAAATCA 98-152_Red_locus1_NK GAATTGGACGATAAAGTCCAGGATAAATCCAAACAA--GCTGAAAAAGAAAACCAAATCA 98-152_Red_locus2_KD -GATTGGACGATAAAGTCCAGGATAAATCCAAACAA--GCTGAAAAAGAAAACCAATTCA J99_Green_locus2_SN CGATTGGATATGCGGGAATGTTAAGACTGCGGATGATTATTTAAAAACGCATCCTAACTC 98-152 ----------------------------------------------TTACGCTCCTACTC * J99_Red_locus1_NK ATTGGTGGAAATATTCA---GGATTAACAATAGCGGCAAGTTTATTATTAGCCGCTTGTA 98-152_Red_locus1_NK ATTGGTGGAAATATTCA---GGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTA 98-152_Red_locus2_KD ATTGGTGGAAATATTCA---GGATTAACAATAGCGACAAGTTTATTATTAGCCGCTTGTA J99_Green_locus2_SN ATGG-TTTAATTCAGCAATAGGTGTAACAGCGATAACAGCCATGCTTATGAATGTGTGTT 98-152 ATGGGTTTAATTCAGCAATAGGTGTAGCAACGATAACAACCATGCTTATGAATGTGTGTT ** * * ** * ** ** ** ** ** * * * * *** J99_Red_locus1_NK GCACTGGTGATATTGATAAACAAATAGAACTA 98-152_Red_locus1_NK GTGTTGGTGATATTGATAAACAAATAGAGTTG 98-152_Red_locus2_KD GTGTTGGTGATATTGATAAACAAATAGAACTA J99_Green_locus2_SN TTGCTGATGACCAATCCAAAAAAGAAGTG--- 98-152 TTGCTGATGACCAATCCAAAAAAGAAGTG--- ** *** *** ** **