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/home/cluster1/data/bu01/1121861/jlex/rdloci/alignments/igrs.meg
#Mega Title: igrs.aln #J99_non-RD_RD-Red_1 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ----------------------------------CCTCCAT---AGGTAA CC-CATAGT--TTTACCT-----TACTTTAGGGGTAGTTTAAGCTTTTAA ----ATAAGGATCTCTTTTA-----TTGTCAAATAACGCTACCATAA--- ------AAAATGATCTCAAAAGCCGACAGATAA-TTAAAAAC---TTAAT GT-----TTTTAATCG---------------------------------- -------------- #M-00-14_non-RD_RD-Red-Long_2 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------------------CTT---GGGTTA CCTCCTAGTAGTTTACCT-----TACTTTAGGGATAGTT-AAGCTTTTAA ----ATAAGAATCCCTTTTA-----TTACCAAATAACGCTACCATAA--- ------AAAAT-----CAAAAGCCGACAGATAA-TTAAAAAC---TTGGT GTAATG-TTTTAATCG---------------------------------- -------------- #26695_non-RD_RD-Red_1 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------------------------CCTCCA TTTGTAAGT--TTTACCT-----TACTTTAGGGATAGCTTAAGCTTTTAA ----ATAAGGATCTCTTTTA-----TTGCCAAATAACGCTACCATAA--- ------AAAATGTTTTCAAAAGCCGACAGATAA-TTAAAAAC---TTGGT GCAATGTTTTTAACCG---------------------------------- -------------- #M-00-14_non-RD_RD-Red_1 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------AGACGCTAAG---GAA-CT CTCTCTTT-ATAA-GAGAGAGGTATAAAAATCATTCTTCATAATAAAACA ACCCCATAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAACGCTAAA GACGATTGGAATTCCTACTAAGGAGTTTAAAAAAGGCTCTGTTCTAATTG GGTAACATAGAGTTTTTAAAATACCATAAATAAGCTAAAAACGATTTTAT GGTGTT--CTTATGC----------------------------------- -------------- #M-00-14_non-RD_RD-Green_2 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------GGACGCTAAG---GAAACT CTCTCTTTTATAAAGAGAGAGGTATAAAAATCATTCTTCATAATAAAACA ACGCCAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAACGCTAAA GACGATTGGAATTCCTACTAAGGAGTTTAAAAAAGGCTCTGTTCTAATTG GGTAACATAGAGTTTTTAAAATACCATAAATAAGCTAAAAACGATTTTAT GGTGTT--CTTATGC----------------------------------- -------------- #J99_non-RD_RD-Green_2 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -----------------------------AGATCCGCTAAAATTAAAACT CTCTCTTTTAAAA-GAGGGAGGTA--AAAATCATTCTTTAT---AAAACA CCGCTAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAACGCTAAA AATGATTAGGATTCCTACTAAGGAGTTTAAAAAAGGCTCTATTCTAATTG GGTAATATAGAGTCTTTAAAATACCATAAATAAGCTAAAAACGATTTTAT GGTGTTTTCTTATGCC---------------------------------- -------------- #26695_non-RD_RD-Red_2 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------GATCCGCTAAATTTAAAACC CCCTCTTTTAAAA-GAGGGAGGTA--AAAATCATTCTTCAT---AAAACG CCACTAAAAATTGCAACCGCTTGTATTTTGTGAAACGCTCAAACGCTAAA GACGATTGGGATTCCTACTAAGGAGTTTAAAAAAGGCTCTGTTCTAACTG GGTAACATAGAGTTTTTAAAATACTATAAATAAGCTAAGAACGATTTTAT GGTGTTTTCTTATGC----------------------------------- -------------- #J99_RD-Red_non-RD_1 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ---------------------------TTACCAACCTTTTTTCAAAAAAC ----AATCTTACCCATCAAAA----CTATATCAAT--GGAAACTAATACG AAAAAATCCACTCAAGTTAGATCAACCCCTTTATTA-------------- -------------------------------------------------- -------------------------------------------------- -------------- #26695_RD-Red_non-RD_1 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ----------------------------TACCAACCTTTYTTTAAMAAAC ----AATCTTACTTTWCAAAA----TYATATCA-T--GGAAACTAATACG AAAAA-TCCACTCAAGTTAGATTGATTTATTTATTA-------------- -------------------------------------------------- -------------------------------------------------- -------------- #26695_RD-Green_RD-Red_1 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------GGCATAA GAAAATAAGAACACCATAAAATCGTTTTTAGCTTCTAGGAGACATCAGTC AGTTTCTTGCCATAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGG TGTGAGTTTAAGGTATAAGGAAAACTTGTATCAAG--TTTTATTGGAATG GATTAGAAAAATCTGATTGGATTGACCCTTACAATTTTTCAAACCAATCG TTTAATAGCGATTAAATATGRCTATATACACTACAACAATA-AGATTTTG AAAGGTTGGTA--------------------------------------- -------------- #26695_RD-Red_RD-Red_2 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------TGTTAATAAAGAAATAGAAGCAGTTGCTAATACTGAAA AGAAAGCAGAAAAAGCGGGTTATGGTTATAGTAAAAGGATGTAGGCATAA GAAAATAAGAACACCATAAAATCGTTTTTAGCTTCTAGGAGACATCAGTC AGTTTCTTGCCATAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGG TGTGAGTTTAAGGTATAAGGAAA-CTTGTATCAAG--TTTTATTGGAATG GATTAGAAAAATCTGATTGGATTGACCCTTACAATTTTTCAAACCAATCG TTTAATAGCGATTAAATATGACTATATACACTACAACAATA-AGATTTTG AAAGGTTGGTA--------------------------------------- -------------- #26695_RD-Red_RD-Green_1 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- --------------------------------------------GCATAA GAAAATAAGAACACCATAAAATCGTTTTTAGCTTCTAGGAGACATCAGTC AGTTTCTTGCCATAGAAAAATCGCTTATTAGCTTGCTCCCTTTAAAAGGG TGTGAGTTTAAGGTATAAGGAAAACTTGTATCAAG--TTTTATTGGAATG GATTAGAAAAATCTGATTGGATTGACCCTTACAATTTTTCAAACCAATCG TTTAATAGCGATTAAATATGGCTATATATACTACAATAATA-AGATTTTG AAAAGTGAGATTGTTTTTTGAAAGGATTTAA------------------- -------------- #J99_RD-Green_non-RD_2 -------------------------------------------------- -------------------------------------------------- -------------------------TTAAATCCTTTCAAAAAACAAT-CT TACCCATCAAAATCTTATTTTTGTAGTATATATAGTCATATTTAATCGCT ATTAAACGATTGGTTTGAAAAATTGTGAGGGTCAATCCAATCAGATTTTT CTAATCCATTCCAATAAAACTTGATACAAGTCTGCCTTGATACCCAAATT CACACCCTTTTAAAGGGAA--TAATAGGTAATAACTCGCTAGCTAAACAT T--CACTCTCTGCTTGAGTGTAAGCCTTTATCATTCCTTTTGACCTACCA AATTATTAGCATTCCTCTCAATCAAGCCTTGAGAAATTCAATTACACCCT TGTTTAACATCGTAAGTCTAGTAACTTAAAGCTCTTTTTTAGAGATTGGG TTAGATTGATCCTTATCCTTAATTCAAGTGCATGCACATTCATCTTTGTT ATCTTTAAGCAAGC #26695_RD-Red_Post-RD_2 AATCTTTGTAAAAAACCCACCAACTGATCTGATTATATTTGTAATGGCAT TCGCTTGTTTAAAATGAGTCTCTTTATTTGCCTTTGCGTTASTGTCTCTG CGTTTTTGCCAACTTTATTTGTTTTTCCTGTTTTTACTGATTCCATTACC AACCTTTCAAAATCTTATTATTGTAGTATATATAGCCATATTTAATCGCT ATTAAACGATTGGTTTGAAAAATTGTAAGGGTCAATCCAATCAGATTTTT CTAATCCATTCCAACAAAACTTGATACAAGTTTTCCTTATACCTTAAACT CACACCCTTTTAAAGGGAA--TAATAAGTAATAACTCGCTAGCTAAACAT T--CACTCTCTGCTTGAGTGTAAGCCTTTATCATTCCTTTTGACCTACCA AAT-ATTAGCATTTCTCTCAATCAAGCCTTGAGAAATTCAATTACACCCT TGTTTAACATCGCAAGCCTAGTAACTTAAAGCTCTTCTTTAGAGATTGGG CTAGATTGATCCTTATCCTTAATTCAAGCGCATGCACATTCATCTTTGTT ATCTTTGAATAAAC #M-00-14_non-RD_RD-Red-Short_2 -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ------------------------------------------------CG TATTCTTTTGTGGTATTTTAGCAAAATCGAATAAATACCAT---AAAATT TCCGAGGTACAATGGGTTAATCTTGTCTTGGAAAAAATTTGAAGAATCAT CCTTAGGGTTAGCAGAAATCGCAAACTCGCAAAGTGTTTTATGTTCGCCA ACGTTAAAAATCGCAACAAAATACTTCTTACTAAAAATATGGAGAGAGAA ATATTTCTCTCTCAAAG--------------------------------- --------------